To start using Analog Helper, either use the blank analysis that comes up when it is opened, or import a previous .cfg file using the Import command in the File menu. On the left, you will have a list of panels of options that you can edit. The first three contain global settings for an analysis, and these are described in the next help section. Each of the rest represents one of the reports that Analog can produce. These are described in a separate help section.
When you are ready to perform an analysis, click the Analyze button or hit return. If you only wish to write the analog.cfg file without actually performing the analysis, click Write Config. You can then perform the analysis later on by running Analog manually, however the output report will not automatically be opened upon completion. The On Open menu lets you set which action you would like Analog Helper to perform on the analysis file when it is opened from the Finder. You can stop this happening when the file is opened by either holding down a modifier key (shift, option, command, control) or opening the analysis from within Analog Helper by choosing Open from the File menu.